Shopify to QuickBooks Online

A Shopify QuickBooks Online connector for payout reconciliation, inventory sync, Shopify POS tracking, and product-level profitability.

Built for Shopify and Shopify Plus stores that need clean accrual accounting, online vs. POS visibility, and location-aware inventory in QuickBooks Online.

Using QuickBooks Desktop? See Shopify → QuickBooks Desktop.

Back to: all integrations | Shopify integrations | QuickBooks Online integrations

QuickBooks versions:
Online Plus, Online Advanced
Shopify store locations:
US, CA

Import details Automated Shopify accounting

Most integrations get it wrong by recording sales the moment a customer pays. Entriwise does it right: we recognize the payment first in a balance account, then record the actual sale only when you ship the order. Every transaction is imported individually, capturing all sales, refunds, and fees so your books stay accurate and tax-ready.
  • ✔ Transaction-level Sync
  • ✔ Payment-First Recognition
  • ✔ Ship-to-Revenue Accounting
  • ✔ Automated Reconciliation
Available in plans: Lite , Standard , Professional

Advanced tracking Track Shopify POS vs. Online Store

Use QuickBooks Online classes to separate your Shopify Online Store sales from your Shopify POS (Point of Sale) locations. Analyze profitability by sales channel to understand where your business is growing.
  • ✔ Separate Reporting for POS vs. Online
  • ✔ Class Tracking by Sales Channel
Available in plans: Lite , Standard , Professional

Inventory mapping Sync Shopify products to QuickBooks inventory

Keep your online and offline inventory in sync. Entriwise maps Shopify SKUs to QuickBooks Online products, deducting inventory in real-time whether the sale happens on your website or via Shopify POS. Prevent overselling and keep your stock levels accurate.
  • ✔ Real-time sync for Online & POS
  • ✔ Map Shopify variants to QBO items
  • ✔ Auto-deduct inventory on sale
Available in plans: Standard , Professional

Advanced inventory Handle Shopify bundles and kits

Selling bundles on Shopify? Map a single Shopify product to multiple inventory items in QuickBooks Online. Entriwise correctly deducts the inventory for each component in the bundle, keeping your COGS and stock counts accurate.
  • ✔ Map bundles to multiple QBO components
  • ✔ Support for complex kit structures
  • ✔ Accurate inventory deduction for bundles
Available in plans: Professional

Location tracking Track sales by Shopify Location

Map your Shopify Locations to corresponding QuickBooks Online Locations for accurate tracking. Entriwise automatically assigns the correct Location tag to each transaction based on the fulfillment source, allowing you to segment your financial reports by warehouse or POS store.
  • ✔ Map Shopify Locations to QBO Locations
  • ✔ Auto-assign Location Tags to Sales
  • ✔ Segment Reporting by Warehouse/Store
Available in plans: Professional

Cost of goods sold Calculate true Shopify profitability

Know your true margins. Entriwise calculates profitability by factoring in COGS, Shopify transaction fees, and shipping costs. See exactly how much profit you're making on each product and order, giving you the data you need to optimize your pricing.
  • ✔ Include transaction fees in COGS
  • ✔ Factor in shipping costs
  • ✔ Product-level profitability reports
Available in plans: Standard , Professional

Sales fees Track payment gateway fees per order

Don't let hidden fees surprise you. Entriwise tracks Shopify Payments and third-party gateway fees for every transaction. See exactly how much you're paying in processing fees and how it affects your bottom line.
  • ✔ Track Shopify Payments fees
  • ✔ Record PayPal/Stripe fees
  • ✔ Net margin visibility
Available in plans: Professional

Your numbers will be reconciled to the penny!

Our unique automatic reconciliation algorithm guarantees 100% correct imports. Whether you process 1,000 or 1,000,000 orders per month, Entriwise imports will reconcile to the penny.

Entriwise app screenshot

Looking for something else? Talk to our in-house CPA and advisors

professionals who understand e-commerce needs.

Together we will find a solution that works exactly for your company, allows up and running quickly, with less disruption to your business.